Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015861182.1_cds_XP_016514879.1_27285
CDS Infomation

[gene=LOC107831610] [db_xref=GeneID:107831610] [protein=germinal center kinase 1-like isoform X3] [protein_id=XP_016514879.1] [location=join(19412..19447,21028..21139,21529..21566,21663..21716,21927..21995,22208..22324,22460..22528,26614..26693,27390..27518,27588..27861,28460..28564,28663..28830,29245..29372,29460..29598,30091..30215,30321..30494,30850..30886)] [gbkey=CDS]
Sequence

ATGGAATACATGGCTGGTGGCTCAGTTGCTGATCTAATTCAACCAAATCAGCCATTGGAT
GAAATGTCTATTGCATGCATTTTACGTGATTTGCTTCATGCTGTTGAATACCTCCACTCT
GAAGGCAAAATTCATCGCGATATCAAAGCGGCTAATATCTTGCTCTCAGAAAATGGTGAT
GTGAAGGTAGCAGATTTTGGCGTTTCTGCACAGCTGACAAGGACGATCTCTAGGAGAAAG
ACATTTGTAGGAACACCATTCTGGATGGCACCTGAAGTAATTCAGAACTCAGAAGGCTAC
AATGAGAAGGCCGATATTTGGTCACTTGGTATAACTGCAATTGAGATGGCCAAAGGGGAA
CCCCCACTTGCTGATCTGCACCCCATGAGAGTACTTTTTATCATACCTCGAGAAAATCCT
CCCCAGCTAGAGGAACACTTTTCTCGTCCTCTCAAGGAATTTGTGTCCTTGTGTTTGAAG
AAGAGTCCTACTGAGAGGCCAAGTGCAAAGGAACTACTGAAGCATCGTTTCATAAGGAAT
GCAAGAAAAAGCCCCAGACTTTTAGAGAGAATCAGGGAGCGCCCCAAGTTTGAAATAAAG
GATGATATTGATTCCCCTAGGAATGGCCTGAAACCTGTAGGGGAAGCATCGGGCACTGTT
AAGGTGACAAGAGATACGGGTACTGAAGACACTGTTAAAGTCAGTGGCCAGGGGAAAACC
CTAAAAACTGCTGGATGGGACTTCAGCATTGGAGGATCATCTAGTACTGGAACTGTCCGA
AGTGTGAAACCACCACAGGTTAGAGATAGGAAACCAGAAGTTCCATCAAATCAACCTGCT
TCAAGAAAAAATTTGGACAGTGGTAACAATTGGTCCTCTGCTTCTGGAACTATTCTTTAT
AACTCATCAGAGGGTTTCAGCCAAAAAGATGACGGAGATGCAAACAACAATGAGAAAAGA
GATTATTCTCGTGAAGATGAGGAATTATCAGTGAGTGGTACTGGAACAGTGGTTGTGAGA
TCACCAAGAGGATCTCCTAGAGGATTTCAGTCCTCTTCTCTGTTCAGTGACCAGAGTTCC
CTGTCCAGTAGCACACTTGCTTCTTTCGAGGATGCTTCTTCCAGTGGCACTGTAGTTTAT
CGTGGACGTCATGATGACCCAGATTCTCCTCGAACGCCAAAATCTAGGTTAGGAATTCAA
GAGAGATCTTCAAGTGCATCACTTGAAGATAGCACAACAAACCTTGCCGAGGCCAAGGCT
GCCATGCTAGCAGGACCAAAGAAAGGAAACGCTAGAGACAGATCGAAATTGGGCAAGGTC
CAACGTGATGGGCTAGAAAATAAAACAGAACAATCAACAATGAGCTCTGATTCTTCTAGG
CACTCTCGCGACTATCTTGATGCGCAGAAGGTGTTTTCAAGATCGCGCCATACAAGTGAT
GAAGAAGATGGTGCGAGAACATATGCTGCACCTTCATCTGCCACCTTATCTGTTCTCCTC
ATTCCTTCACTAAAAGAGACTGCTACTAGTGAATCAGATGGTTCACTCATGCAGGCGATG
GTTGGCTCTTTCTTGGATATGGAGCGCATGAAGCCTGGTTCTTGCGATCTGTTCATGACT
AGGTTGCTCCAGCGACTGGCAAGCTCAAAGGAGTCATCTTTGAAAGATCTGCAAGACCTT
GCTGCTCGCATCTTTGCAAAGGGAAAGATTGAAGCAGAGAGTACAAGTACCGAGGTTGAT
AGCAAGAAAAAACAGCAGAGTAAAGAGCTTAATTCAAATGCGAATTTGAGTCCTCTGGCA
AGGTTCTTGCTCTCAAGATGGCAAGGACATGCTTCTCGAGATCAAAATGCTTAA

Peptide Sequence

PEP ID

XP_016514879.1
PEP Infomation

PREDICTED: germinal center kinase 1-like isoform X3 [Nicotiana tabacum]
Sequence

MEYMAGGSVADLIQPNQPLDEMSIACILRDLLHAVEYLHSEGKIHRDIKAANILLSENGD
VKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSEGYNEKADIWSLGITAIEMAKGE
PPLADLHPMRVLFIIPRENPPQLEEHFSRPLKEFVSLCLKKSPTERPSAKELLKHRFIRN
ARKSPRLLERIRERPKFEIKDDIDSPRNGLKPVGEASGTVKVTRDTGTEDTVKVSGQGKT
LKTAGWDFSIGGSSSTGTVRSVKPPQVRDRKPEVPSNQPASRKNLDSGNNWSSASGTILY
NSSEGFSQKDDGDANNNEKRDYSREDEELSVSGTGTVVVRSPRGSPRGFQSSSLFSDQSS
LSSSTLASFEDASSSGTVVYRGRHDDPDSPRTPKSRLGIQERSSSASLEDSTTNLAEAKA
AMLAGPKKGNARDRSKLGKVQRDGLENKTEQSTMSSDSSRHSRDYLDAQKVFSRSRHTSD
EEDGARTYAAPSSATLSVLLIPSLKETATSESDGSLMQAMVGSFLDMERMKPGSCDLFMT
RLLQRLASSKESSLKDLQDLAARIFAKGKIEAESTSTEVDSKKKQQSKELNSNANLSPLA
RFLLSRWQGHASRDQNA

Transcript Sequence

Gene sequence data has not been registered.